Population Estimation Calculators
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Mark-Recapture: Lincoln-Petersen
N̂ = (M × C) / R
M = animals marked in first capture; C = total in second sample; R = recaptured marked animals. Assumes closed population, equal catchability, no mark loss. Chapman modification: N̂ = (M+1)(C+1)/(R+1) − 1 for small samples.
Distance Sampling (Line Transect)
Observer walks transects of known length L; records all animals detected and their perpendicular distance x from the transect. Density estimated from: D = n / (2 × L × w × g(0)), where n = detections, w = truncation distance, g(0) = detection probability at distance 0. Software DISTANCE analyzes detection functions. Effective strip width varies by species and habitat.
Removal Method
Repeated sampling that removes animals from the population (catch, don't replace). If population is closed, successive samples decline. Using the regression of catch vs. cumulative removal, the x-intercept estimates population size. Used for fish electrofishing, small mammal trapping.
Occupancy Modeling
For species detection probability < 1: model the probability a site is occupied (ψ) and detection probability (p). Multiple survey visits allow ψ and p to be estimated separately. Accounts for imperfect detection — critical when absence could mean either not present or present but undetected.
Glossary
Frequently Asked Questions
N̂ = (M × C)/R. Mark M animals in the first capture and release them. After mixing, capture C animals — count R that are recaptured (marked). N̂ estimates total population based on the assumption that the proportion of marked animals in the second sample equals the proportion marked in the total population: R/C = M/N. Chapman's modified estimator reduces small-sample bias: N̂ = (M+1)(C+1)/(R+1) − 1. Requires a closed population (no births, deaths, immigration, emigration) between the two sampling events.
Distance sampling (line transect or point count) estimates density from the detection distances of animals encountered. Observers record each detection and its perpendicular distance from the transect (or radial distance for points). A detection function models how detectability decreases with distance — all animals at distance 0 are detected; fewer are detected at greater distances. Density = (number detected × scaling factor) / (survey effort × effective detection area). Software 'DISTANCE' fits detection functions and calculates density with confidence intervals. More rigorous than plot methods because it explicitly models imperfect detection.
Occupancy modeling should be used whenever detection probability is less than 1 — meaning a species could be present but go undetected on a given survey visit. With a single survey visit, non-detection could mean either absence or failed detection. Multiple visits to the same sites allow occupancy (ψ = probability of site being occupied) and detection (p = probability of detecting the species given it is present) to be estimated separately. Occupancy modeling is standard for rare, cryptic, or nocturnal species. Program PRESENCE or R packages (unmarked, occupancy) implement these models.
Lincoln-Petersen requires: (1) Closed population — no births, deaths, immigration, emigration between the two samples (or use open population models like Jolly-Seber for longer intervals). (2) Equal capture probability — all individuals equally likely to be captured; violations cause bias if catchability varies by age, sex, or behavior. (3) No mark loss or misidentification. (4) Adequate sample sizes — at least 10–20 recaptures needed for reasonable precision. (5) Random or representative sampling. Tagging stress causing mark avoidance (trap-shy behavior) or attraction (trap-happy) violates equal catchability and biases estimates.